PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Ctg13247756g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24090 Da    PI: 4.4938
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Ctg13247756g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.53.5e-081192341
                                 HHHHHHHHHT-EEEEEEE- CS
                       SRF-TF 23 KAeELSvLCdaevaviifs 41
                                 KA+ELS+LCd++va++if 
  Peinf101Ctg13247756g00001.1  1 KAQELSTLCDVKVAIVIFK 19
                                 9****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.5E-6120IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-9164IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.718120IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.67761148IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
KAQELSTLCD VKVAIVIFKN GENTPILWPS QAVAEEIART FRNTDEFQKM KKLVKLENYL  60
LEKLQDRAEN IRKKNEEMEM EVLFNHLVVG KNINELDVRQ LKGLKKLFEV KRAKVAERKK  120
QLNEEKQLNE DNEKNEDVQP IQDQPDQPQP PPAADKNVSE ASTSSLELLK NNQLFLEAMA  180
ANQDFGLGVE SGTSSGPQEA VKDNDAEEEN DD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1685090.0FJ168509.1 Petunia x hybrida type I MADS box transcription factor (MADSy4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB6DT601e-129B6DT60_PETHY; Type I MADS box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.17e-13M-type_MADS family protein